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  • Select () from the quick action bar to invoke the interactive filter
  • Select 43. CHR Gender for Column 

For categorical columns, the interactive filter displays each category of the selected column as a colored bar. For 42. CHRGendereach bar represents a chromosome with the height of bar representing the number of probes from that chromosome in the selected spreadsheet. To filter out a category, left-click on its bar. Right clicking on a bar will include only the selected category. A pop up balloon will show the category label as you mouse over each bar. 

  • Left-click the and chromosome columns  Male column to filter them it out (Figure 35)

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SubtitleTextAdded experimental group as a sample attribute
AnchorNameSpreadsheet with added attribute
Using Interactive Filter tool to filter out samples by annotation. When pointed to a categorical column, the Interactive Filter tool summarizes the content of the column by a column chart. Left-click to exclude a category (right-hand column was excluded, so it is grayed out), right-click to include only
AnchorNameFiltering Samples

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The yellow and black bar on the right-hand side of the spreadsheet panel shows the fraction of excluded cells rows in black and included cells rows in yellow. Right-clicking this bar brings up an option to clear the filter. 

Now that we have filtered out probes on the X and Y chromosomesmale samples, we will create a spreadsheet containing only probes on the autosomesfemale samples

  • Right click on the ANOVA-1way 1 (ANOVAResultsMethylationspreadsheet in the spreadsheet tree panel (Figure 4)

 

  • 6)

Numbered figure captions
SubtitleTextCloning a filtered spreadsheet creates a new spreadsheet with only the included rows
AnchorNameCreating a Filtered Spreadsheet

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  • Select Clone
  • Rename the new spreadsheet Female_only using the Clone Spreadsheet dialog
  • Select 1 (Methylation) from the Create new spreadsheet as a child spreadsheet: drop-down menu (Figure 7)
  • Select OK

Numbered figure captions
SubtitleTextNaming and configuring filtered spreadsheet
AnchorNameNaming Filtered Spreadsheet

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  • Specify a name for the spreadsheet, we chose female_only, using the Save File dialog
  • Select Save to save the spreadsheet

It is best practice to occasionally save the project you are working on. Let's take the opportunity to do this now. 

  • Select File from the main command toolbar
  • Select Save Project...
  • Specify a name for the project, we chose Methylation, using the Save File dialog
  • Select Save to save the project

Saving the project saves the identity and child-parent relationships of all spreadsheets displayed in the spreadsheet tree. This allows us to open all relevant spreadsheets for our analysis by selecting the project file. 

 

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