Genomics Suite Documentation

PGS Documentation

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  • Select Use Fisher's Exact test 
  • Select Invoke gene ontology browser on the result
  • Set Restrict analysis to functional groups with more than _ genes to 2 (Figure 4)
  • Select Next >

 


Numbered figure captions
SubtitleTextGO Enrichment options
AnchorNameSelecting Gene Set Analysis conditions

 

  • Select Default mapping file (Figure 5)
  • Select Next >

Numbered figure captions
SubtitleTextSelecting the mapping file
AnchorNameSelecting Mapping File

Image Added

A GO-Enrichment spreadsheet, as well as a browser (Figure 6), will be generated with the enrichment score shown for each GO term. Browse through the results to find a functional group of interest by examining the enrichment scores. The higher the enrichment score, the more over represented this functional group is in the input gene list. Alternatively, you may use the Interactive filter on the GO-Enrichment spreadsheet to identify functional groups that have low p-values and perhaps a higher percentage of genes in the group that are present.
Numbered figure captions
SubtitleTextViewing the Gene Ontology Browser
AnchorNameGene Ontology Browser

Image Added

 

Page Turner
button-linkstrue

 

 

Numbered figure captions
SubtitleTextSelecting mapping file for GO Enrichment analysis
AnchorNameSelecting Mapping File

 

 

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