PGS Documentation

Page tree

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

  • Under the Visualization section in the Gene Expression workflow, select Cluster Based on Significant Genes

The Cluster Significant Genes dialog asks you to specify the type of clustering you want to perform.

...

 

  • Choose Hierarchical Clustering and select OKselect OK
  • Choose the Down_Syndrome_vs_Normal (A)  spreadsheet under the Spreadsheet with differentially expressed genes 
  • Choose the Standardize – shift genes to mean of zero and scale to standard deviation of one under the Expression normalization panel (Figure 1) 

This option will adjust all the gene intensities such that the mean is zero and the standard deviation is 1.

 

Numbered figure captions
SubtitleTextConfiguring Hierarchical Clustering
AnchorNameHierarchical Clustering options

...