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| SubtitleText | Box and whiskers plot showing distribution of M-values (y-axis) across the study samples (x-axis). Samples are colored by a categorical attribute (HPSC). The middle line is the median, box represents the upper and the lower quartile, while the whiskers correspond to the 90th and 10th percentile of the data |
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| AnchorName | box whiskers plot |
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An alternative way to take a look at the distribution of M-values is a histogram (QA/QC > Plot Sample Histogram). Again, no sample in the tutorial data set stands out (Figure 3).
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| SubtitleText | Sample histogram. Each sample is a line, M-values are on the horizontal axis and their frequencies on the vertical axis. Two peaks correspond to two probe types (I and II) present on the MethylationEPIC array. Sample colors correspond to a categorical attribute (i.e. HPSC) |
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| AnchorName | sample histogram |
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