Partek Flow Documentation

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maxLevel2
minLevel2
excludeAdditional Assistance

From the GSA the DESeq2 task report, we can browse to any gene in the Chromosome view.

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Numbered figure captions
SubtitleTextBrowsing to a location in Chromosome View
AnchorNameBrowsing to location

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A new tab will open showing SELENOM in the Chromosome view (Figure 2).

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SubtitleTextViewing SELM in Chromosome view
AnchorNameSELM in Chromosome view

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Chromosome View shows reference genome, annotation, and data set information together aligned at genomic coordinates. 

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SubtitleTextChoosing tracks to display in Chromosome view
AnchorNameChoosing tracks to display

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  • Click Reads pileup under Aligned reads on the left-hand side of the dialog 
  • Click Display tracks to make the change

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SubtitleTextThe reads pileup track shows every read in its aligned position on the reference genome
AnchorNameReads pileup track

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To learn more about Chromosome view, please consult the Chromosome View user guide.

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