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In addition to the volcano plot showing all genes, we can view expression levels of each gene on a dot plot.
- Double-click the Feature Filtered feature list data node to open the task report
- Click the FDR step up header in the 5uM vs. 0uM section to sort by ascending FDR step up
In the task report table, there is a column labeled View with three icons 
in each row.
- Select
to open a dot plot for the gene SELENOM
The dot plot for SELENOM (Figure 1) shows each sample as a point with normalized reads on the y-axis. Samples are separated and colored by treatment group.
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- Click Next > to show the next gene in the list on the dot plot
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For more information about the dot plot, please see the Dot Plot user guide.
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In the GSA the DESeq2 report, switch to the browser table with filtered feature list.
In the DESeq2 report, you can select 
to view additional information about the statistical results for a gene or select 
to view the region in Chromosome View. Chromosome View is discussed in the next section of the tutorial.
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