Partek Flow Documentation

Page tree

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

For now, the Analyses tab has a starting node, a circular node called Single cell counts and also a rectangular task node called Spatial report which was automatically generated for this type of data. As you perform analyses, additional nodes representing tasks and new data will be created, forming a visual representation of your analysis pipeline. 

...

Visualize the annotated image from the Annotate Visium image task

If starting with with unprocessed fastq files, the Annotate Visium image task will create a new result node, Annotated counts

...

To color by the Cell attribute "Cell Type"  we  which we previously determined in this tutorial, use the Color by drop-down and select Cell Type. Cell type is a blue categorical attribute while green attributes are numerical. 

...