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Because of the large size of single cell RNA-Seq data sets and the computationally-intensive tools used in single cell analysis, we have amended our system requirements and recommendations for installations of Partek Flow with the Single Cell toolkit. 

Up to 100,000 cells per analysis

Required

• Linux: Ubuntu^® 12 18.04, Redhat^® 6.10 8, CentOS^® 6.10 8, or newer

• CPU: 64-bit 2 GHz quad-core processor

• Memory: 64 GB of RAM

• Local scratch space¹: 1 TB with cached or native speeds of 2GB/s or higher

• Storage: 1   > 2 TB available for data and > 100 GB on the root partition

Recommended

• Linux: Ubuntu^® 16 18.04, Redhat^® 7.6 8, CentOS^® 7.6 8, or newer

• CPU: 64-bit 2 GHz quad-core processor

• Memory: 128 GB of RAM

• Local scratch space¹: 2 TB with cached or native speeds of 2GB/s or higher

• Storage: 1   > 2 TB available for data and > 100 GB on the root partition

More than 100,000 cells per analysis

Required

• Linux: Ubuntu^® 16 18.04, Redhat^® 7.6 8, CentOS^® 7.6 8, or newer

• CPU: 64-bit 2 GHz quad-core processor

• Memory: 256 GB of RAM

• Local scratch space¹: 2 TB with cached or native speeds of 2GB/s or higher

• Storage:  > 4 TB available for data

Recommended

• Linux: Ubuntu^® 16 18.04, Redhat^® 7.6 8, CentOS^® 7.6 8, or newer

• CPU: 64-bit 2 GHz quad-core processor

• Memory: 512 GB of RAM

• Local scratch space¹: 10 TB with cached or native speeds of 2GB/s or higher

• Storage: 10 TB available for data

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¹ Contact Partek support for recommended setup of local scratch storage 

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