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exclude | Additional Assistance |
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We can use a tab-delimited text file to add sample attributes. The text file should have samples on rows and attributes on columns with the first column containing the sample IDs.
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Attributes describe samples. Examples of sample attributes include treatment group, age, sex, and time point. Attributes can be added individually in the Metadata tab or in bulk using a text file. In this tutorial, we will add one attribute, 5-AZA Dose, manually.
- Click the Metadata tab
- Click Manage under Sample attributes (Figure 1)
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SubtitleText | Adding sample attributes from a filemanually |
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AnchorName | Sample attribute addition |
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- Click Add new attribute (Figure 2)
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SubtitleText | Select .txt file with sample attributesAdding a new attribute |
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AnchorName | Selecting text attributes file |
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- To configure a new attribute, at Name, type in 5-AZA Dose as the name of the attribute
- Click Add to add 5-AZA Dose as a categorical, project-specific attribute (Figure 3)
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SubtitleText | Selecting the Treatment attribute for import |
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AnchorName | Selecting attributes to import |
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The treatment attribute will be added as a column next to the sample name (Figure 4)
Configuring a new attribute | AnchorName | Configuring attribute |
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- Name the first New category 0uM
- Click the green plus icon to add category (Figure 4)
- Repeat for two additional categories, 5uM and 10uM (Figure 5)
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SubtitleText | Creating attribute category |
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AnchorName | Creating attribute category |
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SubtitleText | All category attributes for 5-AZA Dose |
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AnchorName | All category attributes for 5-AZA Dose |
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- Click Back to metadata tab
The data table now includes an Attribute column for 5-AZA Dose (Figure 6). Next, we need to assign samples attribute categories for 5-AZA Dose.
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SubtitleText | Data table updated with column for 5-AZA Dose |
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AnchorName | Data table updated with column for 5-AZA Dose |
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The option to edit the 5-AZA Dose field for each sample will appear as a drop-down menu (Figure 7).
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SubtitleText | Dropdown menu to select treatment for each sample |
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AnchorName | Configured treatment groups |
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- Select the 5-AZA Dose text box for a sample to bring up a drop-down menu with the 5-AZA Dose attribute categories (0uM, 5uM, 10uM)
- Use the drop-down menus to add a treatment group for each sample
The first three samples (SRR592573-5) should be 0uM, the next three samples (SRR592576-8) should be 5uM, and the final three samples (SRR592579-81) should be 10uM (Figure 8).
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SubtitleText | Sample attributes appear as a new column in the data table |
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AnchorName | Added sample attributes |
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Add 5-AZA dose to each sample as shown | AnchorName | Configured treatment groups |
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The data table will now show each a 5-AZA Dose attribute for each sample.
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