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- Feature ID information: if transcript level analysis was performed, and the annotation file has both transcript and gene level information, both gene ID and transcript ID are displayed. Otherwise, the table shows only the available information.
- Total readscounts: total number of read counts across all the samples observations from the input data in linear space. If the input data is quantification output, then the total reads is the sum of reads of raw counts; if the input data is normalized, then the total reads is the sum of normalized reads; if the input data is logged, then the total reads is the sum of anti-logged value.
- Each contrast outputs p-value, FDR step up p-value, ratio and fold change in linear scale, LSmean of each group comparison in linear scale
When you click on the Optional columns link on the top-left corner of the table, extra information will be displayed in the table when select:
- Maximum count: maximum number of reads counts across all the observations from the input data.
- Geometric mean: geometric mean value of the input counts across all observations.
- Arithmetic mean: arithmetic mean value of input counts across all observations.
Click on View extra details report (
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Feature list filter panel is on the left of the table (Figure 12). Click on the black triangle (
) to collapse and expand the panel....
The filtered result can be saved into a filtered data node by selecting the Generate list button at the lower-left corner of the table ( ). Selecting the Download button at the lower-right corner of the table downloads the table as a text file to the local computer.
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