This user guide describes how to export gene expression data using Partek's Report Plug-in for Illumina GenomeStudio Gene Expression Module for use in Partek Genome Suite. The GenomeStudio plug-in lets you export data into a project that can be directly opened in Partek Genome Genomics Suite open directly. It is the fastest and most consistent way to get fully annotated Illumina gene expression data into Partek Genomics Suite.

Partek Gene Expression plug-in installation

Download the plug-in zip file, unzip the file, there is a folder called PartekReport which contains two .dll files --Partek.Common.dll and Partek.GeneExpression.GenomeStudio.dll, move the PartekReport folder to 

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Export report from GenomeStudio

In GenomeStudio gene expression project:

• Choose Analysis > Reports... from the main menu
• Select Custom Report and choose Partek Report Plug-in from the drop-down list
• Specify AnnotationName, remove the <>do NOT include <> in the name, you can use the chip namesame name as the .bgx file you imported the data with, or a unique name to your dataset
• Choose Type by clicking on the cell, default is can be gene level
• Leave all the others as default value (Figure 2)
• Specify the report file name and click OK, we recommend to put the exported files in their own folder, which allows you to move the folder instead of all the files individually.
• Click OK

Open project in  Partek Genomics Suite

To open the report, launch Partek Genomics Suite, choose File > Open Project, browse to the .ppj file to open. In the Gene Expression workflow, you can proceed add sample attribute step.