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Filter reads is only available for unaligned reads of FASTQ format. Select the Unaligned Reads data node then select Filter reads from the Pre-alignment tools section on the menu.
There are two options to filter reads: Subsample reads and Filter by read length.
To Subsample reads, specify how many reads you want to keep for every nth reads. For example: if the user specifies to "Keep one read for every 10 reads" (Figure 1), this means that for every 10 reads, the program will keep only 1 read. This is equivalent to keeping 10% of the data.
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To Filter by read length, set the read length limits by choosing the minimum and maximum read length(s) to keep.
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