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The results of differential gene expression analyses (GSA or ANOVA) in Partek® Flow® can Partek Flow can be filtered to extract meaningful results, e.g. statistically significant genes. User-defined filters can be saved and applied to other projects.
This user guide will cover the following topics:
- Saving a custom filter
- Filter management page
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Saving a Custom Filter
On a Feature list task report, specify the criteria to filter the table of statistical results using the Filter dialog (Figure 1) and click the Save filter button. Image Removed
Figure 1:
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SubtitleText | Filter dialog showing filtering criteria (false discovery rate (FDR) step up ≤ 0.1 & Fold change <-1.5 or >1.5) and indicating no filters have been saved yet. The Save filter button is at the bottom of the dialog. The gear icon |
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opens the Filter management page | AnchorName | Filter dialog |
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Name the filter by typing into the Filter name box in the Save filter dialog and click the Save filter button (Figure 2). Image Removed
Figure 2:
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SubtitleText | Give the filter a name and save |
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Saved filters will appear in the Saved filters section in the Filter dialog (Figure 3). All saved Saved filters are only available to all of the users of the Partek Flow user that created them. They will not be available to other administrative or nonadministrative users on the same Partek Flow instance.
To apply a saved filter to a table of statistical results, click the filter name in the saved filters section in the Filter dialog. If a filter is applied to a table, the filter name will appear at the top of the Filter dialog. Image Removed
Figure 3:
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SubtitleText | Saved filters are available at the bottom of the Filter dialog to all the users of the same Partek Flow. |
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AnchorName | Saved filters |
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Hovering over the Preview filter ( Image Removed Image Added) icon in the Filter dialog will show a full description of the filter in a pop-out balloon. Applied filters are displayed at the top of the Filter dialog
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Filter Management Page
To access the Filter management page, click on the gear (Image Modified) icon in the Filter dialog on a Feature list task report (Figure 1, above). Alternatively, click the avatar in the top right corner, choose Settings and click Filter management on the left (Figure 4). This page can be accessed by administrative and nonadministrative Partek Flow users.
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Figure 4: The Filter management page
The The table on the Filter management page displays all saved filters , with one filter per row. created by the Partek Flow user that is currently logged in (Figure 4). Filters created by other Partek Flow users will not be displayed in the table.
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SubtitleText | The Filter management page |
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AnchorName | Filter management |
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Hover over the Preview filter ( Image Removed Image Added) icon in the Actions column to show a full description of the filter in a pop-out balloon (Figure 4). Click the Preview filter ( Image Removed Image Added) icon to show the filter details in a table (Figure 5). To delete a filter, click the red cross (Image Modified) icon in the Actions column on the filter management page (Figure 4). Image Removed
Figure 5:
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SubtitleText | Preview filter in a table |
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