Flow Documentation

Partek Flow Documentation

Page tree

Versions Compared

Old Version 25

changes.mady.by.user Cherry Ignacio

Saved on

compared with

New Version 26

changes.mady.by.user Cherry Ignacio

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Numbered figure captions
SubtitleTextAlignments track: different colouring options. When colouring reads by sample, the reads are stacked (on top of each other), i.e. in the example above there are more reads in the red sample than in the blue sample Various configurations of the Alignments track
AnchorNameAlignments track

Reads coloured by sample

Reads coloured by base calls

Reads split by strand


...

As with the Reads pileup track, probes may not be visible with low power magnification and you will see a message - Zoom in to view individual microarray probes.

 

Peaks Track

 

The Peaks track displays the results of peak caller tasks. It displays a bar that spans genomic location of each peak call. If summits are identified by the peak caller, such as the MACS2 algorithm, then its genomic location is marked by a vertical line. The color marks either the pair being compared by the peak caller or, if present, the sample attribute associated with the sample.

Numbered figure captions
SubtitleTextPeaks track shown for two different pairs
AnchorNamePeaks track

Image Added

 



Additional assistance

 

 

Page Turner
button-linkstrue

...