Partek Flow Documentation

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  • Type - choose the type of data produced by the task from the drop-down list. The set of output types is restricted to those currently supported by downstream Partek Flow tasks: Unaligned readsAligned readsAssembled reads, Quantification, HTML, Image, Annotated counts, or Variants. If you want to output a data type that is not part of this set, select Custom and this will produce an output that can be downloaded.
  • Name - enter a name for the output data node (this will be the data node that will display in the Analyses tab)
  • Exposed - if checked, this output will be exposed as a node on the Analyses tab, otherwise this task will not produce a data node and the output will be accessible through the task result page
  • Required - if checked the task will fail if the executable failed to produce this output.  If left unchecked then this output is optional and task will succeed even if this output was never be produced by the executable.
  • Ouput files as - (for Custom types) choose between a Single file output, All files with prefix, and a list of files in a Directory

  • Output prefix - to restrict only output files with the given prefix
  • Output to - placement of output on the command line, which can be: Last Option, Parameter, Standard Out

  • Output parameter - parameter to place on the command line before this output

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