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  • Set Output file to ChIP-Seq 
  • Set Species to Homo sapiens using the drop-down menu
  • Set Genome build to hg18 using the drop-down menu
  • Select OK

The Bam Smaples Samples Manager dialog will open (Figure 4). This dialog can be used to add samples to the project (Add samples), remove samples (Remove samples), to associate multiple files with particular samples (Manage samples), and to map the chromosome names from the input files to the association files (Manage sequence names). 

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