...

• Invoke the List Manager dialog by selecting Create Gene List in the Analysis section of the Gene Expression workflow
• Ensure that the 1/ANOVA-3way (ANOVAResults) spreadsheet is selected as this is the spreadsheet we will be using to create our new gene list as shown (Figure 9)
• Select the ANOVA Streamlined tab. In the  
• Set Contrast: find genes that change between two categories panel, choose to Down Syndrome vs. Normal and select Have Any Change from the Setting dropdown  drop-down menu list. 

This will find genes with different expression levels in the different types of samples.

• In the Configuration for “Down Syndrome vs Normal” panel, check that Include size of the change is selected and enter 1.3 into Fold change >  and -1.3 in OR Fold change <
• Select Include significance of the change, choose unadjusted p-value from the dropdown menu, and < 0.001 for the cutoff. cutoff  

The number of genes that pass your cutoff criteria will be shown next to the # Pass field. In this example, 30 genes pass the criteria.

...

• Set Save the list as A, select Create, and then select 
• elect Close to view the new gene list spreadsheet
  
  

...