PGS Documentation

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SubtitleTextImport .txt, .tsv, or .csv file dialog
AnchorNameImport .txt, .tsv, or .csv file dialog

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The columns in the import file can be separate by a tab, comma, or any other character. 

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SubtitleTextSelecting the data type
AnchorNameSelecting data type

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Selecting Genomic Data will open a dialog after import to configure properties for the imported list including selecting the type of genomic data, the location of genomic features in the spreadsheet, the annotation column with gene symbols, the chip or reference source and annotation file, the species, and reference genome build. 

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SubtitleTextIdentifying column labels and start of data
AnchorNameIdentifying Column Labels and Start of Data

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If there are many comment lines at the start of the file, you may need to select View Next 5 Records to get to the row that contains the column header. If you accidentally move past the screen that contains the header or data rows, select View Previous 5 Records

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SubtitleTextPreviewing text encoding
AnchorNamePreviewing text encoding

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  • Select Next > 

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SubtitleTextVerifying type and attribute of data columns. While individual column types and attributes can be modified after import, this dialog allows multiple columns to be selected and modified simultaneously.
AnchorNameVerifying Type and Attribute of Data Columns

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  • Check and modify column types and attributes

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SubtitleTextMany types of genomic data can be imported into Partek Genomics Suite using the text data file importer. This dialog allows these files to be associated with an annotation file and reference genome.
AnchorNameConfigure Genomic Properties of Spreadsheet

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  • Select OK 

The imported spreadsheet will open (Figure 7). 

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SubtitleTextAn imported .txt data file spreadsheet
AnchorNameImported .txt file

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