Partek Flow Documentation

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On the table containing the newly allocated elastic IP, right click and select Associate Address

For Instance, select the instance name Flow Test Server

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With newer EC2 instance types, it is possible to change the instance type of an already deployed Partek Flow EC2 server. We recommend doing several rounds of benchmarks with production-sized workloads and evaluate if the resources allocated to your Partek Flow server are sufficient. You may find that reducing resources allocated to the Partek Flow server may come with significant cost savings, but can cause UI responsiveness and job run-times to reach unacceptable levels. Once you have found an instance type that works, you may wish to use reserved instance pricing which is significantly cheaper than on-demand instance pricing. Reserved instances come with 1 or 3-year usage terms. Please see the EC2 Reserved Instance Marketplace to sell or purchase existing reserved instances at reduced rates. 

The network performance of the EC2 instance type becomes an important factor if the primary usage of Partek Flow is for alignment. For this use case, one will have to move copious amounts of data back (input fastq files) and forth (output bam files) between the Partek Flow server and the end users, thus it is important to have as what AWS refers to as high network performance which for most cases is around 1 Gb/s. If focus the focus is primarily on downstream analysis and visualization (e.g. the primary input files are ADAT) then network performance is less of a concern.

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This is dependent on the type of workload. For must users, the Partek Flow server tasks are alignment-heavy so we recommend a throughput optimized HDD (ST1) EBS volume since most aligner operations are sequential in nature. For workloads that focus primarily on downstream analysis, a general purpose SSD volume will suffice but the costs are greater. For those who focus on alignment or host several users, the storage requirements can be high. ST1 EBS volumes have the following characteristics:

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Note that EBS volumes can be grown or performance characteristics changed. To minimize costs, start with a smaller EBS volume allocation of 0.5 - 2 TB as most mature Partek Flow installations generate roughly this amount of data. When necessary, the EBS volume and the underlying file system can be grown on-line (making ext4 a good choice). Shrinking is also possible, but possible but may require the Partek Flow server to be off-lineoffline.


 

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