Partek Flow Documentation

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  • Click the newly created Single cell counts data node
  • Click the Annotation/Metadata section in the toolbox
  • Click Annotate Visium image
  • Click on the Browse button to open the file browser and point to the file <project-name>_spatial.zip, created by the Space Ranger task
  • Click Finish

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Select the zipped image folder for each sample. The image zip file should contains 6 files including image files and tissue position text file with a scale factor json file. The setup page shows the sample table (one sample per row).

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