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For more information about Space Ranger click here.
- Specify the type of 10x Visium assay; this tutorial uses the Visium CytAssist gene expression library as the assay type
- If you have not done so already, a Cell Ranger
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- reference should be created
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- Specify the Reference assembly
- Select the Image and Probe set files that have already been transferred to the server for all samples
- Choose visium-2-large as the Slide parameter because this Visium CystAssist sample used a 11 x 11
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- slide capture area
- Click Finish
Annotate Visium image
To run Annotate cells:
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