Page History
...
The alt-splicing dialog is very similar to ANOVA dialog, the analysis is based on the ANOVA model specified. To setup ANOVA model, select factors from sample attributes. The factors can be categorical or numeric attribute(s). Click on a check button to select and click Add factors button to add it to the model (Figure 1).
Numbered figure captions | ||||
---|---|---|---|---|
| ||||
Transcript ID effect: not all transcripts in a gene express at the same level, so transcript ID is added to the model to account for transcript to transcript differences
Interaction of transcript ID with alt-splicing factor: this effect is to estimate different transcripts have different expression among the levels of the factor
Suppose there is an experiment designed to detect transcripts showing differential expression in two tissue groups: liver vs muscle. The alt-splicing ANOVA dialog allows you to specify the ANOVA model that is tissue, the alt-splicing factor is chosen from the ANOVA factor(s), so the alt-splicing factor is also tissue
Additional assistance |
---|
|
Rate Macro | ||
---|---|---|
|
...