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In the Define pairs section, the left panel list all the sample names, add one pair at a time, select ChIP sample to put in IP panel on the top-right, choose control sample to put in the Control panel on the bottom-right (Figure 1). If there is no control sample in the experiment, the Control panel can be blank. If more than one ChIP or Control samples added, the samples will be combined (or pooled) in the analysis.
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Click on the browse to peak button () to invoke chromosome view and zoom into that location. Click the Download button at the lower-right corner to download the peaks in a text file.
References
- Zhang Y, Liu T, et al. Model-based Analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.
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