Partek Flow Documentation

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maxLevel2
minLevel2
excludeAdditional Assistance

Use Principle Components Analysis (PCA) to reduce dimensions

  • Click the Normalized counts data node 
  • Expand the Exploratory analysis section of the task menu
  • Click PCA 

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From this PCA node, further exploratory tasks can be performed (e.g. t-SNE, UMAP, and Graph-based clustering).

Classify cells based on a marker for expression

  • Choose Style under Configure 
  • Color by and search for fasn by typing the name
  • Select FASN from the drop-down

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