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you will be prompted to enter your password.
This token can be specified as the token parameter.
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curl --form token=cUOWY0VvkSFagr... http://localhost:8080/flow/api/v1/users/list |
...
| Code Block |
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[
{
"annotationModel": "",
"assembly": "hg19",
"description": "Reference sequence",
"fileType": "Genome sequence",
"id": 100
},
{
"annotationModel": "",
"assembly": "hg19",
"description": "Cytoband",
"fileType": "cytoBand.txt",
"id": 101
},
{
"annotationModel": "",
"assembly": "hg19",
"description": "Bowtie index",
"fileType": "Bowtie Index",
"id": 102
},
{
"annotationModel": "hg19_refseq_15_05_07_v2",
"assembly": "hg19",
"description": "Annotation file: hg19_refseq_15_05_07_v2",
"fileType": "Annotation model",
"id": 103
}
] |
The pipeline can be launched in any project using RunPython.py
...
| Code Block | ||
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curl -X PUT "http://localhost:8080/flow/api/v1/projects?project=ProjectName&collaborator=user1&role=Collaborator&token=$FLOW_TOKEN" |
Transfer feature lists
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curl --form token=$TO_TOKEN --form url=http://from:8080/flow/api/v1/feature_lists/export?token=$FROM_TOKEN http://to:8080/flow/api/v1/feature_lists/import |
Monitor a folder and upload files as they are created
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| Code Block | ||
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#!/bin/bash
while true; do
result=`python QueueStatistics.py --server $SERVER --token $TOKEN --max_waiting $MAX_WAITING`
if [ $? -eq 1 ]; then
/usr/bin/notify-send $result
exit 1
fi
sleep $INTERVAL
done |
| Additional assistance |
|---|
| Rate Macro | ||
|---|---|---|
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