...

Parameters in this task that you can adjust include:

Gene cutoff: Filter out genes with average expressions among tissue spots below or equal to this cutoff. Default: 0.1.

Max iteration: Maximum iteration for EM parameter updates. Default: 10. Set a smaller number to save computation time. 

References

1. Ni, Z., Prasad, A., Chen, S. et al. SpotClean adjusts for spot swapping in spatial transcriptomics data. Nat Commun 13, 2971 (2022). https://doi.org/10.1038/s41467-022-30587-y

...