Page History
...
The task can only be invoked from the Space ranger task output data node since It takes the raw count matrix as input. It returns the decontaminated gene expressions in a new data node. To run the Spot clean task in Flow:
...
| Numbered figure captions | ||||
|---|---|---|---|---|
| ||||
|
A group Another single cell counts node will be generated. The data node contains a matrix of cell counts in each sample for each group. You can view the counts results in the Group cell counts report with the decontaminated gene expressions (Figure 2).
| Numbered figure captions | ||||
|---|---|---|---|---|
| ||||
|
The Cell counts data node is a counts type data node and downstream analysis tasks, such as normalization, PCA, and ANOVA, can be used to analyze the group cell counts data.
...
Overview
Content Tools