Flow Documentation

Partek Flow Documentation

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Numbered figure captions
SubtitleTextCounting reads and alignments for paired-end reads. Sequencing read 1 is imported as one paired-end read, with two alignments. Sequencing read 2 is imported as one paired-end read, with three alignments
AnchorNamecounting-reads

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PGS shows the number of alignments per sample in the “parent” spreadsheet of a RNA-seq project, while the alignments and reads per sample are reported in the mapping_summary spreadsheet. The alignment_counts spreadsheet contains the number of alignments per read in each sample and it can be invoked through the QA/QC section of the RNA-seq workflow.

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