...

Numbered figure captions
SubtitleText RNA-Seq workflow with principal components analysis (PCA) task invoked on the Gene counts data node AnchorName rnaseq-pca
Image RemovedImage Added

On the other hand, the Cufflinks quantification node is not associated with a detailed report like the Partek E/M nodes, so opening the node by double clicking (or going via the toolbox) brings up the PCA plot directly.

...

 

Numbered figure captions
SubtitleText Customize colors dialog (default appearance). General tab (palette) is used for sample coloring and general sample attribute-based coloring in the chromosome view, hierarchical clustering, and general charts and graphs. Two-color numeric tab (palette) is used to color by numeric sample attribute in the hierarchical clustering, principal components analysis, and dot plot views. Save button saves your color preferences AnchorName custom-colors
Image Modified

When click on a dot (sample), it will be selected and a label of the sample will be displayed, from the Label by drop-down list to select how to label the selected sample. To select more than one  samples,  press Ctrl & click.

...

 

Numbered figure captions
SubtitleText Principal components analysis plot in 2D. Each dot is a sample. The axes show the first two principal components, with the fraction of explained variance in the parenthesis (an example) AnchorName pca-2d
Image RemovedImage Added

 

Although first three PCs are shown by default, you can plot any of the first nine PCs, by using the X, Y, and Z drop-down lists.

...