Partek Flow Documentation

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SubtitleTextK-mer Content plot. Position of a K-mer is on the horizontal axis, while the K-mer frequency is on the y-axis. Top six K-mers are listed below the plot. In this example, the value of K was set to eight. The most frequent reported K-mer (CTGTCTCT) is a reverse complement of a commonly used adapter (AGAGACAG)
AnchorNamekmer-content

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The pre-alignment QA/QC report as described above is generally available for the NGS data of fastq format. For other types of data, the report may differ depending on the availability of information. For example, for fasta format, there is no base quality score information and therefore all the figures or graphs related to base or read quality score will be unavailable. 

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