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The report produced by DESeq2 is similar to the ANOVA report; each row is a feature and columns include p-value, FDR p-value and fold change in linear scale for each contrast. However DESeq2(R) report doesn't have LSMeans information on the compared groups.
References
Love MI, Huber W, and Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 2014l 15(12): 550.
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Overview
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