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Hurdle model advanced options

Low value filter

Low-value filter allows you to specify criteria to exclude features that do not meet requirements for the calculation. If there is filter feature task performed in the upstream analysis, the default of this filter is set to None, otherwise, the default is Lowest average coverage is set to 1.

Lowest average coverage: the computation will exclude a feature if its geometric mean across all samples is below than the specified value

Lowest maximum coverage: the computation will exclude a feature if its maximum across all samples is below the specified value

Minimum coverage: the computation will exclude a feature if its sum across all samples is below than the specified value

None: include all features in the computation

Multiple test correction

Multiple test correction can be performed on the p-values of each comparison, with FDR step-up being the default. If you check the Storey q-value, an extra column with q-values will be added to the report.

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