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If you are processing your data using Cell RangerFASTQ files in Partek Flow, be sure to specify a different feature_different Data type for your Cell Hashing antibodies than any other antibodies in the Feature Reference CSV FileFASTQ files on import than the FASTQ files for your gene expression and any other antibody data. 

If you are processing your data in Partek FlowFASTQ files using Cell Ranger, be sure to specify a different Data different feature_type for your Cell Hashing FASTQ files on import than the FASTQ files for your gene expression and any other antibody dataantibodies than any other antibodies in the Feature Reference CSV File. 

If you want to specify each Sample of origin instead of using the hashtag feature ID, you will need to prepare a Sample ID .csv file with the hashtag feature ID in the first column and the corresponding sample ID in the second column. 

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