Partek Flow Documentation

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Numbered figure captions
SubtitleTextSelect all 3 files for importing
AnchorNameSelect_filtered_gene_bc_matrices

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Specify the annotation file used when running the pipeline. If desired, the sample name can also be modified. 

 

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SubtitleTextConfiguring matrix metadata
AnchorNameConfigure_SC_matrix_metadata

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Click Finish when you have completed configuration.This will queue the import task.

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SubtitleTextImporting matrix in h5 format
AnchorNameH5_matrix_import

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This feature is also useful for importing multiple samples in batch. Simply put all h5 files from your experiment on a single folder, navigate to the folder and select all the matrices you would like to import.

 

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SubtitleTextImport multiple matrices in batch by selecting all h5 files
AnchorNameSelect_multiple_h5

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Configure all the relevant sample metadata, including sample name and the annotation that was used to generate the matrices, click Finish when completed. Note that all matrices must have been generated using the same reference genome and annotation to be imported into the same project.

 

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SubtitleTextConfigure matrix information for all h5 matrices to be imported
AnchorNameConfigure_multiple_h5_import

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Additional assistance

 

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