Partek Flow Documentation

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You can obtain the tutorial data set through Partek Flow.
  • Select Click your avatar
  • Select Settings  from Click Settings in the drop-down menu (Figure 1)

 


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SubtitleTextLocation of the Settings link on the main page of Partek Flow
AnchorNameSetttings

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At the top of the System information page, there is a section labeled Download tutorial data (Figure 2).

 

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SubtitleTextSelect RNA-Seq 5-AZA to download the sample data set
AnchorNameDownload tutorial data

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  • Select Click RNA-Seq 5-AZA to download the tutorial data set

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SubtitleTextA new project will be automatically created and populated with the tutorial data set
AnchorNameLoading the tutorial data set

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At first the project is empty, but the file download will start automatically in the background. You can wait a few minutes then refresh your browser or you can monitor the download progress using the Queue

  • Select Click Queue 
  • Select Click View Queued Tasks from in the drop-down menu

The Queued tasks page will open (Figure 4). 

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SubtitleTextViewing download progress in the Queued tasks page
AnchorNameQueue

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  • Select Click Projects
  • Select Click RNA-Seq 5-AZA from in the drop-down menu

The Analyses tab will open (Figure 5). If you download has completed, you will see a blue circle titled Unaligned reads. We will return to this page in the next section of the tutorial.

 

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SubtitleTextAnalyses tab showing Unaligned Reads data node
AnchorNameProject analyses tab

We can edit the project name, description, and users who can access it using the Project settings menu.

  • Select the Project settings tab
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  • Set the name to RNA-Seq Tutorial or whatever you prefer
  • Write a brief description; for example, 5-AZA data set 
  • Select Save
  • Refresh your browser 

Once the download completes, the sample table will appear in the Data tab.

  • Select Click the Data tab (Figure 5)tab 

The Data tab includes the sample table with the names of each imported sample . There should be 9 samples once the import has completed (Figure 56). 

 

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SubtitleTextSample table in the Data tab after downloading the tutorial data set
AnchorNameData tab

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In the next section of the tutorial, we will add a sample attributes attribute that designate indicates the treatment group of each sample. 

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