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The plot will be shaded to reflect the gate. Cells that are excluded will be shown as black dots on both plots (Figure 13). 

Because this data set was already filtered by the study authors to include only high-quality cells, this read counts filter is sufficient for this tutorial. 

• Click Apply filter 

A new task, Filter cells, is added to the Analyses tab. This task produces a new Single cell data node (Figure 14).

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There are three categories of filter available - Noise reduction filters, Statitics bsaed Statistics based filters, and Feature list filters (Figure 16).

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