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Returns data about a specified library file
Required parameters
For upload:
Parameter | Type | Description |
|---|---|---|
file | binary | The file content. |
file_type | string | The type of library file: reference_genome. The list of available library file types is returned by /library_files/types |
assembly | string | The assembly of the library file |
...
Parameter | Type | Description |
|---|---|---|
file_type | string | The type of library file: reference_genome. The list of available library file types is returned by /library_files/types |
assembly | string | The assembly of the library file |
...
404: Returned if no library file is managed for the specified library file and assembly
/library_files/types
POST, GET
Returns the list of library file types that the server can managed
Responses
200: application/json
The list of manageable library file types: Genome sequence, cytoBand.txt, Annotation model, Bowtie Index, Bowtie Colorspace Index, Bowtie2 Index, Tmap Index, BWA Index, SHRiMP2 Index, SHRiMP2 Colorspace Index, GSNAP Index, STAR Index, STAR 2.4.1d Index, Isaac2 Index, GSNAP 2015-12-31 (v8) Index, Variant database, Variant frequencies, Gene Set, SnpEff, VEP, Kraken Database
/library_files/list
POST, GET
Returns information about library files managed by the server
Required
Optional parameters
Parameter | Type | Description | |
|---|---|---|---|
| assembly | string | The assembly | .
Optional parameters
Parameter | Type | Description |
|---|---|---|
annotation_model OR annotationModel | string | The annotation model |
file_type OR fileType | string | The type of library file. The list of available library file types is returned by /library_files/types |
description | string | Filter the library file list to those that match this description. |
| id | integer | The ID of the library file |
Responses
200: application/json
The assembly, annotation model, filetype, description and id for each library file managed for the specified assembly.
400: Returned if the assembly parameter is missing.
Example
http://example.com:8080/flow/api/v1/library_files/list?assembly=hg19
[
{
"description": "Reference sequence",
"id": 1
},
{
"description": "Bowtie index",
"id": 2
}
...
that passes the filters.
Pipelines
/pipelines
POST, GET
...
Overview
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