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In addition to the volcano plot showing all genes, we can view expression levels of each gene on a dot plot.
- Double-click the Feature list data node to open the task report
- Select FDR step up from the 5uM vs. 0uM section to sort by ascending FDR step up
In the task report table, there is a column labeled View with three icons
in each row.- Select to open a dot plot for the gene SELM
The dot plot for SELM (Figure) shows each sample as a point with normalized reads on the y-axis. Samples are separated and colored by treatment group.
- Select Next > to show the next gene in the list on the dot plot
For more information about the dot plot, please see the Dot Plot user guide.
- Select Gene-specific analysis report to return to the task report spreadsheet
We can select
to view additional information about the statistical results for a gene or select to view the region in Chromosome View. Chromosome View is discussed in the next section of the tutorial.
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