PGS Documentation

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Opening a gene list as a child spreadsheet

Gene lists can be visualized and their ability to distinguish samples evaluated using a hierarchical clustering heat map. Because of the batch effect in this data set, we will perform hierarchical clustering using batch-corrected intensity values. To do this, we need to open the fourtreatments list of differentially expressed genes as a child spreadsheet of the batch-remove spreadsheet

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Visualizations performed using the fourtreatments spreadsheet will now use intensity values from the batch-remove spreadsheet.

Hierarchical clustering using a gene list

To invoke hierarchical clustering, follow the steps below.

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