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| SubtitleText | Selecting Finding Overlapping Genes form the main toolbar |
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| AnchorName | Selecting Finding Overlapping Genes |
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- Select Create a new spreadsheet with genes that overlap with the regions in the Find Overlapping Genes dialog
- Select OK
- Select an annotation - this tutorial uses RefSeq Transcripts - 2014-01-03
- You can select a name for the new list, we have named it gene-list
- Select OK
A new spreadsheet will be created as a child spreadsheet (Figure 2)
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| SubtitleText | Annotating the differentially methylated CpG loci with genes |
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| AnchorName | Overlapping Genes List |
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Partek Genomics Suite offers several tools to help interpret this list of genes. First, let's look at
Gene Set Analysis.
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| SubtitleText | GO enrichment browser showing gene groups overrepresented in the list of genes which overlap with differentially methylated CpG loci |
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| AnchorName | GO Enrichment spreadsheet |
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Next, we can perform
Pathway Analysis to see which pathways are over represented in the gene overlapped by differentially regulated CpG loci.
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