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Genomics Suite Documentation

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Numbered figure captions
SubtitleTextBrowsing to location from spreadsheet with differentially expressed genes
AnchorNameBrowsing to Location

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The Genome Viewer Chromosome View tab will open, zoomed in to the selected CpG locus in CDK14 (Figure 2). 

 

Numbered figure captions
SubtitleTextViewing location in Genome Viewer
AnchorNameView at Location

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The Genome Viewer Chromosome View visualization is composed of a series of tracks corresponding to annotation files and data files. 

  • RefSeq Transcripts 20142017-0105-03 02 (hg19) (+): transcripts coded by the positive strand
  • RefSeq Transcripts 20142017-0105-03 02 (hg19) (-): transcripts coded by the negative strand
  • Regions: by default, fold-change difference in methylation between the groups
  • Heatmap: M values for all the samples
  • Barchart: methylation levels of the selected sample (to select a sample, click on a heat map)
  • Cytoband: cytobands of the current chromosome
  • Genomic Label: coordinates on the current chromosome 

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