PGS Documentation

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Numbered figure captions
SubtitleTextAdding p-value and motif binding tracks
AnchorNameChIP-Seq genome viewer plus tracks

 

The two track display the detected regions at each location on the chromosome for the NRSF-enriched sample, chip, and aligned them to the de novo discovered motif binding sites. If you have not gone through the steps for peak detection and motif discovery, these tracks will not be available. 

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Numbered figure captions
SubtitleTextMove tracks by left-clicking and dragging them in the Tracks panel
AnchorNameChIP-Seq genome viewer moving track

 

The Genome Viewer opens to a whole-chromosome view of chromosome 1. To analyze the data we can zoom in on the data (Figure 6).

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Numbered figure captions
SubtitleTextViewing the zoomed-in view of an enriched region showing two possible binding sites at the location
AnchorNameZooming in on Genome Viewer

 

There are four methods for zooming in and out in the Genome Viewer. (1) Select () to activate Zoom/Navigate Mode. With this mode selected, left-clicking and drawing a box on a track will zoom to the region in the box. (2) Use the mouse scroll wheel (3) Select the zoom in () and zoom out () on the zoom controls (). Selecting () resets the zoom to whole chromosome. (4) Use the slider on the zoom controls (). (5) Zoom to a location or gene by typing the coordinates or gene name in the Navigation bar () and pressing Enter on your keyboard. (5) Starting on a spreadsheet, right-click a row with region information, and select Browse to Location

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