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The API reference documentation is available here:  REST API Manual for Partek Flow's REST API

The public key and Python libraries are available here:  PartekFlow-REST.zip

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Generate an authentication token 

An access token can be generated from the System information section of the settings page. 

Image Modified

Alternatively, GetToken.py will generate a token.

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Monitor a folder and upload files as they are created

#!/bin/bash

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inotifywait -m $PATH_TO_MONITOR -e create -e moved_to

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  while read path action file; do

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 |
  while read path action file; do
      if [[ $file == *.fastq.gz ]];

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              echo "Uploading $file"

              python UploadSamples.py -v --server $SERVER --user $USER --password $TOKEN --files $path/$file --project "$PROJECT" 

      fi

  done

 then
              echo "Uploading $file"
              python UploadSamples.py -v --server $SERVER --user $USER --password $TOKEN --files $path/$file --project "$PROJECT" 
      fi
  done

Monitor the queue and send a notification if there are too many waiting tasks

#!/bin/bash

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while true;

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 do
      result=`python QueueStatistics.py --server $SERVER --user $USER --password $TOKEN --max_waiting $MAX_WAITING`

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      if [ $? -eq 1 ];

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 then
              /usr/bin/notify-send

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              exit 1

      fi

      sleep $INTERVAL

 $result
              exit 1
      fi
      sleep $INTERVAL
done