Genomics Suite Documentation

PGS Documentation

Page tree

Versions Compared

Old Version 2

changes.mady.by.user Paul Fullerton

Saved on

compared with

New Version 3

changes.mady.by.user Paul Fullerton

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Partek Genomics Suite enables you to visualize each probe and compare the methylation between the groups at a single CpG site level. 

  • Right click row 19 Cdk14 in the LCLs vs. B cells spreadsheet
  • Select Browse to Location from the pop-up menu

Numbered figure captions
SubtitleTextBrowsing to location from spreadsheet with differentially expressed genes
AnchorNameBrowsing to Location

The Genome Viewer tab will open, displaying the selected CpG locus in CDK14 (Figure 2). 

 

Numbered figure captions
SubtitleTextViewing location in Genome Viewer
AnchorNameView at Location

Image RemovedImage Added

 

 

The visualization can be supplemented with a special annotation file which can be built using a UCSC annotation file as the basis. Building and viewing the UCSC annotation file is available as an optional section of the tutorial, Optional: Adding UCSC CpG Island Annotations. 

...