PGS Documentation

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The zipped project file contains several prepared files used in this analysis as well as the annotation information for the BeadChip. The zipped file also contains a Partek project file (.ppj).

  • After downloading the file, go to File > Import > Zipped project... and browse to on your local drive

Partek Genomics Suite will automatically unzip the file, read the .ppj file, open and annotate all spreadsheets (Figure 1). The parent spreadsheet (GSE8479-AVGSignal) contains the original intensity data. The first child spreadsheet (ANOVAResults) contains the results of differential gene expression analysis from a 3-way ANOVA. The second child spreadsheet (Gene_List.txt) is a list of significantly differentially expressed genes. When working with your own data, you will need to detect differentially expressed genes and create a gene list yourself.


Figure 1. Viewing the Gene List spreadsheet


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