Visualize the annotated image

With samples imported and annotated, we can begin analysis. 

• Click Analyses to switch to the Analyses tab

For now, the Analyses tab has only a single, circular node, Single cell counts. As you perform the analysis, additional nodes representing tasks and new data will be created, forming a visual representation of your analysis pipeline. A Spatial report task result node (rectangle) is also automatically generated for this type of data. 

• Click the Spatial report node
• Click Task report on the task menu (Figure 7)

Figure 1. Selecting the task report for the Spatial report task from the task menu

The spatial report will display the first sample (Replicate 1). We want to visualize all of the samples. 

• Duplicate the plot by clicking the Duplicate plot button in the upper right controls (Figure 8, arrow 1)
• Open the Axes configuration option (Figure 8, arrow 2)
• Change the Sample on the duplicated image under Misc (Figure 8, arrow 3)

Figure 2. Editing the spatial task report for multiple samples

Modify the image using Style

To modify the points on the image to show more of the histology use the Style configuration option (Figure 9). 

• Click Style in the left panel
• Move the Opacity slider to the left
• Change the Point size to 3 

Figure 3. Use the Style configuration option to edit the look of the points on the image

To save the Data Viewer session, click Save in the left panel and give the session an appropriate name. 

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