To run Trajectory analysis tool, select the Normalized counts data node (or equivalent) and go to the toolbox: Exploratory analysis > Trajectory analysis
There configuration dialog presents two options.
Result of running Trajectory analysis in Partek Flow is the Trajectory result data node. Double clicking on the node opens a Data Viewer window with the trajectory plot (Figure xxx). Cell trajectory graph shows position of each cell (blue dot) with respect to the UMAP coordinates (axes). Cell trajectories (one or more, depending on the data set) are depicted as black lines. Gray circles are trajectory nodes (i.e. cell communities).
To show / hide cell trajectory tree and trajectory nodes, use the Extra data option on the Content card (Figure xxx).