This is a collection of blog posts from our website that you might find of interest.

How to select the best single cell quality control thresholds
The answer no one wants to hear

Using trajectory analysis to study cellular differentiation in single cell RNA-Seq experiments
Using trajectory analysis to determine their fate

Tissue transcriptomics—what’s the big deal and why you should do it
Transcriptome-wide studies of gene expression certainly provide invaluable insight into biology on a molecular level, particularly when performed at the single-cell level

Less is more: detecting differential gene expression in single cell RNA-Seq analysis
Which tools to use for single cell analysis

Batch remover for single cell data
Can nuisance batch effects or undesirable numeric or categorical factors be removed?

How to perform single cell RNA sequencing: exploratory analysis
Step one in performing single cell analysis

Bioinformatics approach to spatially resolved transcriptomics
A review of spatial transcriptomic analysis