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If you would like specific groups (e.g. cell types) in a certain order, do not perform hierarchical clustering on these cells and instead choose to assign order, then use click and drag to reorder the groups. If you want to remove a group, you can choose to exclude this group in the filtering section. You can still perform hierarchical clustering on the features if you would like to. Hierarchical clustering will force the heatmap to cluster and you would need to click the dendrogram nodes to switch the order. Click here for more information. 

How do I display UMAP for each sample in Data Viewer?

IFor multi-sample project, all the downstream tasks will be run separately if the PCA ran with 'Split by sample' checked. Visualization of different samples could be displayed by 'Sample' option under 'Misc' section in 'axis' card. If one would like to show different samples side by side, one can click 'Duplicate plot' first, then use the 'Sample' option to switch one of the samples.

Statistics FAQs

Why do I get "?" for FDR p-values in my Deseq2 result?

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