Partek Flow Documentation

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  • The file contains numeric values in a table tab-delimited format, samples can be on rows (features are on columns) or columns (features are on rows)while features (e.g.gene names) are in columns, or vice versa
  • The file contains unique sample ID IDs and feature IDIDs
  • If there are the data contains sample attribute information, all the information these attributes have to be at the beginning of the table, the left most ether  
    • The leftmost columns when samples are on rows (Figure 8)
    or the top
    •  
    • The first few rows when samples are on columns (Figure 9)
    .


Numbered figure captions
SubtitleTextExample of sample on row, the first column is sample ID, the 2nd and 3rd columns contain sample attribute information, feature count starts from column 4
AnchorNamesample on row
 

 

Numbered figure captions
SubtitleTextExample of sample on column, the first row is sample ID, the 2nd and 3rd rows contain sample attribute information, feature count starts from column 4
AnchorNamesample on column
After select the text file which can be on Like all other input files, you can upload the file from the Partek Flow server, or My Computer or URLvia a URL. Uploading the file brings up a file preview window. The preview of the first few rows and columns of the text file should help you determine on which rowrows/column columns the relevant counts are located (the preview will show display up to 100 rows and 100 columns). Inspect the text preview and indicate which row the data header begins.

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Figure 9 is showing an example text file contains samples on rows, the first column is sample ID, sample attributes are in column 2 and column 3. Gene count starts from column 4 with gene ID in row one. The gene ID is compatible with the hg19 RefSeq transcript Transcripts - 2016-08-01 annotation model.

If the data has been log transformed, specify the base under Counts format.

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